Package: SummaryLasso 1.2.1

SummaryLasso: Building Polygenic Risk Score Using GWAS Summary Statistics

Shrinkage estimator for polygenic risk prediction models based on summary statistics of genome-wide association studies.

Authors:Ting-Huei Chen

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SummaryLasso.pdf |SummaryLasso.html✨
SummaryLasso/json (API)

# Install 'SummaryLasso' in R:
install.packages('SummaryLasso', repos = c('https://thstat22.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • Nvec - A vector of sample sizes for the q traits of the 'summaryZ'.
  • funcIndex - Inputs for the functional annotations of SNPs.
  • plinkLD - The LD info from output of the software
  • summaryZ - The Z statistics from the univariate analysis of the association between 3614 SNPs and three traits respectively.

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 1 stars 2 scripts 142 downloads 2 exports 1 dependencies

Last updated 5 years agofrom:b49790b42f. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 25 2024
R-4.5-win-x86_64OKOct 25 2024
R-4.5-linux-x86_64OKOct 25 2024
R-4.4-win-x86_64OKOct 25 2024
R-4.4-mac-x86_64OKOct 25 2024
R-4.4-mac-aarch64OKOct 25 2024
R-4.3-win-x86_64OKOct 25 2024
R-4.3-mac-x86_64OKOct 25 2024
R-4.3-mac-aarch64OKOct 25 2024

Exports:gsfPENgsPEN

Dependencies:gtools